GLOSSARY

The words used to describe marine life.

211 terms, defined in plain English. Every term used in a species entry is here and is linked the first time it appears on a page. The rest are the words a diver meets everywhere else: the parts of a shark, a jellyfish, a shell and a worm; how animals live together and where; and what the abbreviations in a scientific name mean.

Anatomy plates

Ten body plans, drawn with the parts named. Every label is a term from the list below and links to it, and every entry that appears on a plate says which one. The plates cover the groups whose anatomy is hardest to describe in words; the terms below cover the rest.

Dorid nudibranch

Dorid nudibranch, seen from above Line drawing of a dorid nudibranch from above, head to the left. The broad mantle is covered in tubercles, a pair of lamellate rhinophores stands near the head, a plume of feathery gills sits on the back towards the rear, short oral tentacles project at the front and the foot emerges as a tail behind the mantle. Two enlarged details below show the toothed radula and three caryophyllidia.

A dorid seen from above. The gill plume, the pair of rhinophores and the broad mantle are the three characters that place an animal here rather than among the aeolids or the flatworms.

Aeolid nudibranch

Aeolid nudibranch, seen from the side and slightly above Line drawing of an aeolid nudibranch, head to the left, its back covered in ranks of curved finger-like cerata instead of a gill plume. A pair of smooth rhinophores stands behind two shorter oral tentacles, and the foot runs the length of the underside. One ceras is drawn enlarged below, showing the branch of the digestive gland running up inside it and the cnidosac of stored stinging cells at its tip. one ceras, enlarged

An aeolid. No gill plume: the cerata do the breathing, carry a branch of the digestive gland, and end in a cnidosac holding stinging cells taken intact from the animal's prey.

Bony fish

A generic perch-like bony fish, seen from the side Line drawing of a perch-like bony fish from the side, head to the left. The back carries a spinous dorsal fin in front of a soft-rayed one; the flank carries the pectoral fin, the lateral line and the bony operculum over the gills; the underside carries the pelvic and anal fins; and the body narrows to the caudal peduncle before the forked caudal fin. Two enlarged details below show a gill arch with its rakers and filaments, and a surgeonfish's caudal peduncle with its blade.

The perch-like plan most reef fish are built on. Fin position, fin counts and what is marked on the caudal peduncle carry most of the weight in an identification key.

Frogfish

Frogfish, seen from the side Line drawing of a frogfish from the side, head to the left. The first dorsal spine is drawn out into an illicium arching forward over the snout and ending in a tufted esca. The mouth opens as a wide upturned gape at the front, the pectoral fin is lobed and jointed like an arm with the pelvic fins propping the body in front of it, and the skin carries branched dermal appendages and small papillae.

A frogfish. The first dorsal spine has become a fishing rod: the illicium carries the esca, and the shape of the esca is often the most reliable way to tell two frogfish apart.

Squid and octopus

Squid and octopus, showing the parts common to both Two line drawings. Above, a squid seen from the side: a torpedo-shaped mantle with a fin either side of its rear end, a small head with a large eye, the siphon beneath it, eight arms and two longer feeding tentacles ending in clubs. Below, an octopus: a bag-like mantle raised into papillae and speckled with chromatophores, the ink sac drawn as a dashed outline inside it, the siphon emerging at the mantle opening, and eight sucker-bearing arms, one ending in the spoon-shaped tip of the hectocotylus. squid octopus

An octopus has eight arms; a squid or cuttlefish has eight arms and two longer tentacles it shoots out to take prey. Both jet, breathe and ink through the siphon.

Decapod shrimp

A decapod shrimp, seen from the side Line drawing of a shrimp from the side, head to the left. A toothed rostrum projects in front of the carapace, with a stalked eye, forked antennules and long antennae in front of it. Five pairs of pereiopods hang below the carapace, the front pairs ending in small claws; the segmented pleon behind carries five pairs of feathery pleopods and ends in a tail fan of a telson flanked by two pairs of uropods.

The decapod plan. Everything in front of the joint behind the carapace is head and thorax; everything behind it is pleon, and the pleon is what a shrimp flicks to shoot backwards.

Mantis shrimp

Mantis shrimp from above, with the two forms of striking limb Line drawing of a mantis shrimp seen from above, head to the left. Two eyes on movable stalks project in front of the carapace, with the raptorial appendages folded beneath them; the segmented body runs back to an armoured telson flanked by a pair of uropods. Two enlarged details below compare the striking limb of a spearer, whose dactyl carries a row of barbs, with that of a smasher, whose dactyl is folded away behind a swollen calcified heel. spearer smasher

A mantis shrimp. The raptorial appendage is the whole animal's argument: spearers flick out a barbed dactyl to seize soft prey, smashers strike with the heel.

Seahorse

Seahorse, seen from the side Line drawing of a seahorse from the side, head at the top left. The head carries a bony coronet and a tubular snout; the body is armoured in bony rings rather than scales, with a small dorsal fin on the back and a pectoral fin behind the head; the male's brood pouch swells on the belly; and the prehensile tail tapers and coils around a holdfast.

Every character used to name a seahorse is on the outside: the coronet, the length of the snout, the count of trunk and tail rings, and the skin filaments some species carry.

Sea star and urchin

Sea star from above, with an arm from below and a cut-away urchin Line drawing of a five-armed sea star seen from the aboral surface, the side away from the mouth, with the plating of its ossicles indicated and the perforated madreporite set off-centre on the disc. Below it, one arm is drawn from the oral side, showing the ambulacral groove running out along it with two rows of tube feet; beside that, a sea urchin is drawn with part of the test exposed, carrying spines, tube feet and stalked pedicellariae. one arm, below urchin in section

Echinoderm anatomy is arranged around the mouth: the oral surface carries the ambulacral grooves and the tube feet, and the aboral surface carries the madreporite that lets water into the system that works them.

Cnidarian polyp

A cnidarian polyp cut open, with nematocysts and a coral colony surface Line drawing of a single anemone or coral polyp with one wall cut away: a column fixed at its base, an oral disc at the top with the mouth at its centre and a ring of tentacles around its rim, the pharynx leading down from the mouth and sheets of mesentery dividing the space inside. Small circles in the tissue stand for zooxanthellae. Below, two nematocysts are drawn enlarged, one with the thread still coiled inside the capsule and one fired. To the right, part of a hard-coral colony shows the septa radiating inside each corallite. one polyp, in section nematocysts colony surface

The polyp is the unit. An anemone is one large polyp; a hard coral is a colony of small ones, each sitting in a corallite of its own making.

The terms

aboraladipose finaeolidaggressive mimicryambulacral grooveamphipodampullae of Lorenzinianal finantennaantennuleaposematicaposematismAristotle's lanternascidianatollazooxanthellatebarrier reefBatesian mimicrybatoidbenthicbinomialbiofluorescencebioluminescencebivalvebleachingbommiebony ringsbrood pouchbryozoanbyssuscalicecarapacecaryophyllidiacaudal bladecaudal fincaudal keelcaudal pedunclecentral disccephalofoilceratacetaceancf.chelipedchloroplastchromatophoreciguateracircumtropicalcirriclaspercleaning stationcnidocytecnidosaccolloblastcolumellacomb rowcommensalCoral Trianglecorallitecoronetcounter-illuminationcountershadingcrepuscularcrinoidcrypticcryptobenthicCuvierian tubulesdactyldecapoddemersaldenticledermal appendagesdigestive glanddisruptive colorationdiurnaldoriddorsal findrift divedrop-offecholocationegg caseelasmobranchendemicescaeviscerationexoskeletoneyestalkflukefootfringing reeffusiformgapegastropodgill plumegill rakershaloclineharemhectocotylusholothurianhydroidhydrozoanilliciuminitial phaseink sacisopodlagoonlateral linelunatemadreporitemangrovemantlemaxillipedmedusamelonmesenterymesogleamoultmuckmucus cocoonmutualismnacrenematocystnictitating membranenocturnalobligateocellusoperculumophiuroidoral armsoral discoral tentaclesossicleovigerousoviparousovoviviparouspalaemonidpapillaeparapodiaparasitepectoral finpedicellariaepelvic finpereiopodspharyngeal teethphoto-identificationpinnipedpinnuleplanktivoreplastronpleonpleopodspoisonouspolycladpolypprehensile tailproboscisprostomiumprotandrous hermaphroditeprotogynous hermaphroditeradioleradularam ventilationraptorial appendagerhinophoresrostrumsacoglossansalt glandschoolscleritescuteseagrassseamountseptumsequestersetaeshoalsiphonsiphonophoresireniansnoutsoft raysp.spawning aggregationspecies complexspiculespiraclestomatopodsubstratesurgeswim bladdersymbiosistelsontentacleterminal maletesttetrodotoxinthermoclinetube feettubercletype localityupwellinguropodsveligervenomousvertical migrationvibrissaeviviparouswater vascular systemwhorlzoeazooidzooxanthellae
aboral
also aboral surface

The surface of an echinoderm facing away from the mouth: the upper side of a sea star, the side that carries the madreporite. The mouth side is the oral surface.

Labelled on Sea star and urchin

adipose fin

A small fleshy fin on the back between the dorsal and the tail, with no supporting rays. Among fish a diver meets it is mainly the lizardfish and the eeltail catfish that carry one.

aeolid
also aeolids, aeolid nudibranch

A nudibranch with the back covered in cerata rather than carrying a gill plume. Aeolids feed on hydroids, anemones and soft corals, and most of them store their prey's stinging cells for their own defence.

aggressive mimicry

Resembling something harmless in order to get close to prey. The false cleanerfish copies the cleaner wrasse and bites the fish that comes to be cleaned.

ambulacral groove
also ambulacral, ambulacra

The channel running out along the underside of each arm of a sea star, carrying the tube feet. It is where the commensal shrimps and parasitic snails of a sea star are usually found.

Labelled on Sea star and urchin

amphipod
also amphipods

A small crustacean flattened from side to side, with no carapace over the thorax. Includes the skeleton shrimps, which hold on to a hydroid with the rear legs and reach into the water with the front pair.

ampullae of Lorenzini
also ampullae

Jelly-filled pores in the snout of a shark or ray that detect the weak electric fields produced by muscle activity. They are how a shark finds a fish buried in sand, and are visible as a field of dark dots around the mouth.

anal fin
also anal fins

The unpaired fin on the underside of a fish, behind the vent. Its ray count and the number of spines in front of it are standard characters in an identification key.

Labelled on Bony fish

antenna
also antennae

The longer, whip-like pair of sensory appendages on a crustacean's head, set behind the antennules. In many shrimps they are several times the length of the body, and they are usually the first part of the animal a torch finds.

Labelled on Decapod shrimp

antennule
also antennules

The shorter pair of sensory appendages in front of the antennae, carrying most of a crustacean's chemical sense. They branch; the antennae behind them do not, which is how the two pairs are told apart.

Labelled on Decapod shrimp

aposematic
also aposematism

Conspicuously coloured as a warning that the animal is toxic, venomous or otherwise not worth eating. The blue rings of Hapalochlaena are the clearest example here.

aposematism
also aposematic, warning colouration

Conspicuous colouring that advertises being toxic or dangerous. It only works if predators learn it, which is why several unrelated toxic species converge on the same pattern - Mullerian mimicry - and why a harmless species sometimes copies it.

Aristotle's lantern

The five-part jaw apparatus inside a sea urchin, worked by a set of muscles and carrying five self-sharpening teeth. It is what lets an urchin graze rock and, in some species, bore into it.

ascidian
also ascidians, sea squirt, sea squirts, tunicate

A sessile filter-feeding chordate, solitary or colonial, drawing water in through one siphon and out through another. The swimming larva has a notochord and a tail and gives them up on settling. Food for several nudibranchs and flatworms.

atoll

A ring of reef around a lagoon with no central island, formed as a volcanic island subsided beneath a reef that kept growing upward.

azooxanthellate
also ahermatypic

A coral that carries no symbiotic algae and feeds entirely by catching plankton. These are the corals that can live in caves, under overhangs and in deep or turbid water, and their polyps are usually out by day as well as at night.

barrier reef

A reef running parallel to the coast but separated from it by a lagoon deep and wide enough to be a distinct body of water.

Batesian mimicry
also Batesian, Batesian mimic

An edible or harmless animal taking on the appearance of a defended one, so that predators which have learned to avoid the model also avoid the copy. The mimic filefish and Valentin's sharpnose puffer are the clearest pair on these reefs; the copy only works while the model is the commoner of the two.

batoid
also batoids

A ray, skate or guitarfish: an elasmobranch flattened from top to bottom, with the gill openings on the underside and the pectoral fins fused to the head to form the disc it swims with.

benthic

Living on or in the seabed rather than swimming in the water above it. Nearly everything in this reference is benthic.

binomial
also scientific name

The two-part scientific name of a species: genus first and capitalised, species second and lower case, both italicised. Common names vary between countries and languages; the binomial does not.

biofluorescence
also fluorescence

Light of one colour absorbed by an animal and re-emitted at another. Unlike bioluminescence it produces no light of its own and shows only under a blue light with a yellow filter over the lens.

bioluminescence

Light produced by the animal itself, by a chemical reaction or by bacteria it keeps. Used for signalling, for luring prey and for counter-illumination, and best seen on a night dive with lights off.

bivalve
also bivalves

A mollusc with a shell in two hinged halves: clams, scallops, oysters, pen shells and the giant clams. Most filter feed, and the giant clams also farm algae in their mantle tissue.

bleaching
also coral bleaching

The loss of a coral's symbiotic algae, usually because the water has been too warm for too long. The coral turns white because the algae carried its colour. It is not dead at that point, but it is starving, and it dies if the water does not cool.

bommie
also coral head

An isolated tower or mound of coral standing clear of the surrounding sand or reef flat. Small ones hold a complete community and can be worked all dive.

bony rings
also bony ring, trunk rings, tail rings

The armour of a seahorse or pipefish: bony plates fused into rings around the body in place of scales. Trunk and tail rings are counted in identification, and they are why a seahorse is stiff to the touch and why it bends only at the tail.

Labelled on Seahorse

brood pouch
also brood pouches

The enclosed pocket on the belly of a male seahorse or pipefish that carries the eggs until they hatch. The female deposits the eggs into it and the male fertilises them there.

Labelled on Seahorse

bryozoan
also bryozoans, moss animal

A colonial animal forming lace, moss or twig-like encrustations on hard surfaces, each colony made of many tiny feeding individuals. Food for Tambja and its relatives, from which they take their pigments and their defence.

byssus
also byssal threads

The bundle of tough threads a mussel, a pen shell or a juvenile giant clam spins to anchor itself. It is protein, secreted as a liquid that sets in seawater.

calice

The cup at the top of a corallite, where the living polyp sits. Its diameter and depth separate species that otherwise look alike.

carapace

The hard shield covering the front part of a crustacean's body, from behind the eyes to the start of the abdomen.

Labelled on Decapod shrimpMantis shrimp

caryophyllidia
also caryophyllidium

Minute stalked papillae, each ringed with calcareous spicules and topped by a sensory knob, covering the back of some dorid nudibranchs. They are what gives Jorunna its velvet texture and the sea bunny its fur.

Labelled on Dorid nudibranch

caudal blade
also caudal spine, caudal blades

The hinged, forward-facing scalpel at the base of a surgeonfish's tail, and the fixed pair of blades in the unicornfishes. It is used against rivals and predators, is sharp enough to cut deeply, and in some species carries venom. It is a hazard to handling a fish, not to swimming past one.

Labelled on Bony fish

caudal fin
also tail fin

The tail fin. Its outline - rounded, truncate, emarginate, forked or lunate - follows how the fish swims, and it is one of the more useful things to note in the water.

Labelled on Bony fishFrogfish

caudal keel

A ridge along each side of the tail base on fast open-water fish and sharks. It stiffens the tail and reduces drag, and is one of the marks of an animal built for continuous swimming.

caudal peduncle
also caudal peduncles

The narrow part of a fish's body between the rear of the anal and dorsal fins and the base of the tail. A great deal of identification hangs on what is marked there: a spot, a bar, a saddle or a blade.

Labelled on Bony fish

central disc
also central disk

The body of a sea star or brittle star, from which the arms extend. In brittle stars it is sharply set off from the arms; in most sea stars the two grade into one another.

Labelled on Sea star and urchin

cephalofoil

The flattened, sideways-extended head of a hammerhead shark. It spreads the ampullae of Lorenzini over a wider area and gives the animal a wider field of view.

cerata
also ceras

The finger-like outgrowths along the back of an aeolid nudibranch, carrying extensions of the gut and, at their tips, the cnidosacs.

Labelled on Aeolid nudibranch

cetacean
also cetaceans

A whale, dolphin or porpoise. Air-breathing mammals fully adapted to water, with a horizontal tail fluke, and in the toothed species the ability to echolocate.

cf.

From the Latin for compare. Written between the genus and species name it means the animal resembles that species but the identification is not certain.

cheliped
also chelipeds, chela, chelae

A clawed leg of a crustacean, the first pereiopod in most decapods. Its size, shape and armament are identification characters, and in several shrimps and crabs the two are markedly unequal.

Labelled on Decapod shrimp

chloroplast
also chloroplasts, kleptoplasty

The photosynthesising organelle of a plant or alga. Sacoglossan sea slugs pierce algal cells and keep the chloroplasts alive and working in their own tissue for days to weeks - kleptoplasty. The genes needed to maintain one belong to the alga, not the slug, which is why the arrangement eventually runs down.

chromatophore
also chromatophores

A pigment-bearing cell that an animal can expand or contract to change colour. The layered chromatophores of cephalopods are what allow a cuttlefish to change appearance in under a second.

Labelled on Squid and octopus

ciguatera
also ciguatoxin

Poisoning from eating reef fish that have accumulated toxins originating in dinoflagellates growing on reef surfaces. The toxins concentrate up the food chain, so large predators carry most of the risk, and they survive cooking. Nothing about a fish's appearance indicates it. It is a hazard of eating reef fish, not of diving with them.

circumtropical
also pantropical

Found in tropical waters around the world. Used in the entries in place of a region when a species genuinely occurs in all three ocean basins.

cirri
also cirrus

Slender fleshy filaments, most often on the head or above the eye. A field character in scorpionfish, blennies and some nudibranchs.

Labelled on Seahorse

clasper
also claspers

The paired rod on the inner edge of the pelvic fins of a male shark or ray, used in mating. Present or absent is the reliable way to sex an elasmobranch in a photograph.

cleaning station
also cleaning stations

A fixed place on a reef where cleaner wrasses, cleaner shrimps or juvenile fish remove parasites and dead tissue from larger animals that queue for it. Because the place is fixed rather than the animal, a cleaning station is the most reliable way to see a manta, a turtle or a large grouper hold still.

cnidocyte
also stinging cell

The cell that holds a nematocyst. Cnidarians are named for these cells, and they are the reason a jellyfish, an anemone, a hydroid and a fire coral all sting.

cnidosac
also cnidosacs

A sac at the tip of a nudibranch's cerata storing stinging cells taken intact from the animal's prey and reused for its own defence.

Labelled on Aeolid nudibranch

colloblast
also colloblasts

The sticky cell a comb jelly catches prey with. Comb jellies have no nematocysts and do not sting: they glue their food instead.

columella

The central pillar of a coiled snail shell, visible down the middle of the opening. Its folds and ridges are diagnostic in several families.

comb row
also ctene, comb rows

One of the eight rows of fused cilia a comb jelly swims with. They beat in waves and split light as they do, which is the running rainbow seen along the animal. It is refraction, not bioluminescence.

commensal
also commensally

Living on or with another species and benefiting from it, without obviously harming or helping the host. A great many muck subjects are commensal on urchins, sea cucumbers, corals and sponges.

Coral Triangle

The area covering Indonesia, Malaysia, the Philippines, Papua New Guinea, Timor-Leste and the Solomon Islands. It holds more reef fish and coral species than anywhere else on earth.

corallite
also corallites

The cup of skeleton laid down by a single hard-coral polyp. The size, spacing and wall structure of the corallites is how a hard coral is identified, and it is what remains visible when the polyps are withdrawn.

Labelled on Cnidarian polyp

coronet
also coronets

The crown of bone on the top of a seahorse's head. Its height and shape are used in identification, and in some species no two individuals carry quite the same one.

Labelled on Seahorse

counter-illumination
also counterillumination

Producing light on the underside of the body to match the faint daylight coming from above, so that nothing looking up sees a silhouette. It is why many open-water and deep-water animals carry photophores on the belly and not on the back.

countershading

Dark above and pale below. Seen from above the animal matches the dark water below it, seen from below it matches the bright surface. It is the commonest colour scheme in open water and it is camouflage, not decoration.

crepuscular

Active at dusk and dawn. The changeover period, when the day shift is going in and the night shift is coming out, and when several species mate.

crinoid
also crinoids, feather star

A feather star: an echinoderm with a small disc, a ring of feathered filtering arms and short gripping cirri underneath. Habitat for a squat lobster, a shrimp and a clingfish, each coloured to match the arms of its own host.

cryptic
also crypsis

Concealed by resembling the background. Distinct from mimicry, where an animal resembles another organism rather than the surroundings.

cryptobenthic

Small bottom-living fish that spend their lives hidden in rubble, sponge or coral. They are a large share of reef fish by number, are eaten constantly, and are mostly overlooked by divers.

Cuvierian tubules

Sticky white threads some sea cucumbers eject when disturbed, which tangle and immobilise a small attacker. They stick firmly to skin and to a camera port.

dactyl
also dactylus, dactyls

The last, movable segment of a crustacean limb: the finger of a claw, the point of a walking leg. In mantis shrimps it is the part that does the damage - barbed and folding in the spearers, swollen into a calcified heel in the smashers.

Labelled on Mantis shrimp

decapod
also decapods

A crustacean with ten legs: the shrimps, crabs, hermit crabs, squat lobsters and lobsters. Most of the crustaceans a diver photographs are decapods.

demersal

Living close to the bottom without resting on it permanently.

denticle
also dermal denticle, placoid scale

The tooth-like scale that covers shark and ray skin, made of the same material as a tooth and pointing backwards. It is what makes shark skin feel smooth one way and rough the other, and it reduces drag.

dermal appendages
also dermal appendage

Filaments and tassels of skin that break up an animal's outline against algae or hydroids. Characteristic of hairy frogfish, rhinopias and several scorpionfish.

Labelled on Frogfish

digestive gland
also digestive glands

The branched gland that does the work of a liver and much of the gut in a mollusc. In aeolid nudibranchs a branch runs up into every ceras, which is why the animal takes its colour from what it has been eating.

Labelled on Aeolid nudibranch

disruptive coloration

Bold bands or blotches that break up the outline of an animal so the eye does not read it as one shape. The bar through the eye on many reef fish is the same idea applied to the one feature a predator looks for.

diurnal

Active by day. Used in the entries alongside nocturnal and crepuscular to say when a species is worth looking for.

dorid
also dorids, dorid nudibranch

The largest group of nudibranchs: a broad flat mantle, a pair of rhinophores at the front and a ring or plume of gills on the back that can usually be retracted. Most feed on sponges. The phyllidiids are dorids that have given up the dorsal gill and breathe under the mantle margin instead.

dorsal fin
also dorsal fins, spinous dorsal, soft dorsal

The fin along a fish's back, in many families divided into a spinous first part and a soft-rayed second. Spine and ray counts here are among the most-used characters in fish identification.

Labelled on Bony fishFrogfishSeahorse

drift dive
also drift diving

A dive made by letting the current carry you, with the boat following the surface marker. The alternative to swimming against water that will win.

drop-off

The point where a reef ends and the bottom falls away steeply. Big animals patrol along it, the water is usually clearer off the edge, and depth is easy to lose track of.

echolocation

Finding objects by making a sound and listening to the echo. Dolphins produce clicks through the nasal passages, focus them with the melon, and hear the returns through the lower jaw.

egg case
also mermaid's purse

The horny capsule an oviparous shark, skate or catshark lays, usually with tendrils that anchor it to a sea fan or a rock. Empty cases wash up; a full one held to a light shows the embryo.

elasmobranch
also cartilaginous fish

A shark, ray or skate. The group has a skeleton of cartilage rather than bone, no swim bladder, and skin covered in tooth-like denticles rather than scales. Without a swim bladder a shark either keeps moving or rests on the bottom.

endemic
also endemism

Found only in one region and nowhere else. The Red Sea and the Galapagos both have a high proportion of endemic fish, which is a large part of why divers go to them.

esca

The lure at the tip of an anglerfish's first dorsal spine, waved to draw prey within reach. Its shape is species-specific and is often the most reliable way to tell frogfish apart.

Labelled on Frogfish

evisceration

The ejection of part of the gut by a sea cucumber under stress. It is a defence, and the animal regrows what it lost, but it is a serious cost and is one reason not to handle them.

exoskeleton

The hard external skeleton of a crustacean or other arthropod. It cannot expand, which is why growth happens in steps at each moult rather than continuously.

eyestalk
also eyestalks, stalked eyes, stalked eye

A movable stalk carrying the eye, found in crabs, shrimps and mantis shrimps. It lets the eye be raised, aimed and folded away independently of the body.

Labelled on Decapod shrimpMantis shrimp

fluke
also flukes

The horizontal tail of a whale, dolphin or dugong. It beats up and down, unlike a fish tail, which beats side to side.

fringing reef

A reef growing directly out from the shore, with no lagoon between. The commonest reef type and the one most shore dives are on.

fusiform

Torpedo-shaped: thickest a third of the way back and tapering at both ends. The body plan of a fish that swims continuously in open water, such as a tuna, a jack or a barracuda.

gape

The mouth at full opening. Frogfish and the other anglerfish have the largest gape relative to body size of any fish and expand it fast enough that the strike is over in a few thousandths of a second, which is why it is almost never seen.

Labelled on Frogfish

gastropod
also gastropods

A snail or slug. The group includes the shelled sea snails, the sea hares, the pleurobranchs and the nudibranchs, and the shell has been reduced or lost independently many times within it.

gill plume
also branchial plume

The ring or fan of feathery gills on the back of a dorid nudibranch, usually retractable into a pocket. Its absence places an animal in the phyllidiids, the aeolids or the flatworms rather than among the dorids.

Labelled on Dorid nudibranch

gill rakers
also gill raker

The comb of projections along the inner edge of a fish's gill arches. Long, fine rakers strain plankton from water passing over the gills, which is how fusiliers, mackerel and manta rays feed; short, stout ones sort and hold prey that has already been caught.

Labelled on Bony fish

halocline

The boundary between water of different salinity, seen as an oily shimmer. It occurs where fresh water meets salt, at a river mouth or in a cavern.

harem
also harems

A group of one adult male and several females holding a shared area, usual in anthias, dwarf angelfish and many wrasses. In the protogynous species the arrangement is unstable by design: lose the male and the dominant female becomes one.

hectocotylus
also hectocotylised, hectocotylised arm

The modified arm with which a male cephalopod passes a sperm packet to a female. Which arm it is, and how it is modified, is a species character; in a few octopuses it detaches and is left behind.

Labelled on Squid and octopus

holothurian
also holothurians, sea cucumber

A sea cucumber: an echinoderm with a soft elongate body, a ring of feeding tentacles at the mouth and, in many species, sticky defensive tubules it can eject. Several process sediment for a living and leave coiled casts on the surface.

hydroid
also hydroids

A cnidarian that spends most of its life as a branching colony of polyps fixed to the bottom, often looking like a fern or a feather. Several sting sharply, and many nudibranchs and shrimps live only on them.

hydrozoan
also hydrozoans, hydroid colony

A member of the class that includes the hydroids, fire corals and siphonophores. They are cnidarians, related to jellyfish and anemones rather than to the true corals, and most of them sting. A great deal of what a diver takes for coral or weed on a reef is hydrozoan.

illicium

The modified first dorsal spine of an anglerfish that carries the esca — the rod, to the esca's bait.

Labelled on Frogfish

initial phase
also initial-phase

The first adult colouring of a wrasse or parrotfish, worn by females and by males that have not yet changed. It is usually plain and is frequently different enough from the terminal male to be logged as another species.

ink sac
also ink gland

The gland in which a cephalopod stores ink, released through the siphon. It works as a screen and also as a decoy, since a cloud held together by mucus is about the size and shape of the animal that left it.

Labelled on Squid and octopus

isopod
also isopods

A crustacean flattened from top to bottom, with seven pairs of similar legs. The marine ones a diver notices are parasites riding on fish, in the mouth or on the flank.

lagoon

Sheltered water inside a reef or an atoll. Usually shallow, often sandy, and calmer and warmer than the outside of the reef.

lateral line
also lateral lines

The line of pored scales along a fish's flank, opening into a canal of sensory cells that read water movement. Its course, and the point at which it is interrupted or steps down, is an identification character.

Labelled on Bony fish

lunate

Crescent-shaped, of a tail: deeply forked with the lobes drawn out and the trailing edge curved. It goes with sustained fast swimming, which is why it is found in trevallies, tunas and the open-water anthias and unicornfishes rather than in reef-bound fish.

madreporite
also madreporites

The perforated plate on the upper surface of a sea star or urchin, set off-centre between two arms, through which water enters the animal's hydraulic system. It usually shows as a pale button.

Labelled on Sea star and urchin

mangrove
also mangroves

Salt-tolerant trees growing in the intertidal zone, whose submerged roots hold juvenile fish, sponges and anemones. The water is usually green and shallow.

mantle
also mantle margin

The body wall of a mollusc, which secretes the shell where there is one. In a dorid nudibranch it is the broad flat skirt covering the back and overhanging the foot, and its margin is where the phyllidiids breathe. In a cephalopod it is the muscular sac behind the head enclosing the organs, and mantle length is the standard measurement, since arms stretch and contract.

Labelled on Dorid nudibranchSquid and octopus

maxilliped
also maxillipeds

One of the appendages between a crustacean's mouthparts and its walking legs. In porcelain crabs the third pair carries long feathered setae and is swept through the water to strain out plankton.

Labelled on Decapod shrimp

medusa
also medusae

The free-swimming, bell-shaped stage of a cnidarian: what everyone calls a jellyfish. Many cnidarians alternate between a fixed polyp stage and a drifting medusa stage, and a few skip one of the two.

melon

The fatty structure in the forehead of a toothed whale or dolphin that focuses the clicks used in echolocation. It is what gives the animal its rounded profile.

mesentery
also mesenteries

One of the sheets of tissue that divide the inside of an anemone or coral polyp, carrying the digestive filaments and the reproductive tissue. Their number and arrangement is used in classification.

Labelled on Cnidarian polyp

mesoglea

The jelly layer between the two cell layers of a cnidarian. It is most of the volume of a jellyfish and is what makes the animal transparent.

moult
also moulting, ecdysis

The shedding of the old exoskeleton that lets a crustacean grow. The animal is soft and defenceless for hours afterwards and normally hides. A complete empty shell on the sand, with the legs and antennae intact, is a moult rather than a dead animal.

muck
also muck diving, black sand

Diving on soft bottoms of sand, silt or volcanic sediment rather than on reef. The ground looks empty and holds a high number of specialised animals, most of them small, buried or living on a host.

mucus cocoon
also mucus envelope, mucus cocoons

A bag of mucus that many parrotfishes secrete around themselves before sleeping in a crevice. The working explanation is that it masks the fish's scent from night-hunting predators, particularly moray eels. Night divers find them wrapped this way regularly; the cocoon takes about half an hour to build and is abandoned at dawn.

mutualism
also mutualistic

A relationship in which both species gain. The shrimpgoby and its snapping shrimp share a burrow the shrimp digs and the goby watches; the anemonefish defends the anemone that shelters it.

nacre
also mother-of-pearl

The iridescent inner layer of some shells, laid down in sheets thin enough to split light. The same material coats an intruding grain of sand and forms a pearl.

nematocyst
also nematocysts, stinging cells

The stinging capsule of a jellyfish, anemone, hydroid or coral. Each is a single cell holding a coiled, barbed thread under pressure, fired by touch. Aeolid nudibranchs eat cnidarians, pass the nematocysts through the gut undischarged, and store them in their own cerata to use.

Labelled on Aeolid nudibranchCnidarian polyp

nictitating membrane

A third eyelid that sweeps across the eye of some sharks to protect it, most obviously at the moment of a bite. Sharks without one, such as the white shark, roll the eye back instead.

nocturnal

Active at night. A large share of the animals in this reference are nocturnal, which is why the same site gives a different list after dark.

obligate
also obligately

Restricted to one way of life, with no alternative. An obligate associate is found only on its host and cannot live independently, as opposed to a facultative one, which can.

ocellus
also ocelli

An eye-like spot of colour. Used to startle predators or to draw an attack away from the real head.

operculum
also opercula

A lid. In tube worms, the hard plug that seals the tube behind the withdrawing animal; in a fish, the bony cover over the gills.

Labelled on Bony fish

ophiuroid
also ophiuroids, brittle star

A brittle star: five thin arms sharply set off from a small central disc, moving by whipping rather than by tube feet. The arms detach at pre-formed breakage planes and regrow.

oral arms

The thick, frilled arms hanging from the centre of a jellyfish bell, carrying the mouths. They are shorter and heavier than the tentacles around the rim.

oral disc
also oral discs, oral disk

The flat upper surface of an anemone or coral polyp, with the mouth at its centre and the tentacles around its rim.

Labelled on Cnidarian polyp

oral tentacles
also oral tentacle

The pair of short sensory tentacles beside a sea slug's mouth, used to touch and taste the ground it is crossing. They are distinct from the rhinophores, which sit further back and read scent carried in the water.

Labelled on Dorid nudibranchAeolid nudibranch

ossicle
also ossicles

A small calcareous element embedded in the body wall of an echinoderm. Their shape is a primary identification character in sea cucumbers, and in the synaptids they are anchor-shaped and catch on a wetsuit.

Labelled on Sea star and urchin

ovigerous
also berried

Carrying eggs. A female shrimp, crab or lobster holds the egg mass under the abdomen, and it is often visible through the shell before it is visible outside.

oviparous
also egg-laying

Laying eggs that develop outside the mother. Among sharks it is the catsharks, bamboo sharks and horn sharks, which leave a tough egg case attached to the bottom.

ovoviviparous

Producing eggs that hatch inside the mother, so the young are born live but were fed by the yolk rather than by the mother. Common among sharks and among scorpionfish.

palaemonid
also palaemonids

Belonging to the Palaemonidae, the family holding most of the small commensal shrimps found on urchins, corals, anemones and sea cucumbers.

papillae
also papilla

Small fleshy projections of the skin. Octopuses and frogfish raise and lower them to change outline and texture, which is what makes a hairy octopus hairy one moment and smooth the next.

Labelled on FrogfishSquid and octopus

parapodia
also parapodium, parapodial

Paired flaps along the sides of some sea slugs and worms. In Plakobranchus they fold over the back like a book and are opened flat to the light.

parasite
also parasitic, parasitism

An animal that lives on or in another at its expense without normally killing it. The isopods on a cardinalfish and the barnacle inside a crab are the examples in this reference.

pectoral fin
also pectoral fins

The paired fin behind the gill cover, answering to a forelimb. It does most of the swimming in wrasses and parrotfishes, and in frogfish it is lobed, jointed and used to walk.

Labelled on Bony fishFrogfishSeahorse

pedicellariae
also pedicellaria

Tiny stalked pincers scattered between a sea urchin's spines, used to clean the surface and deter settlers. In several fire urchins they are venomous, which is part of why an urchin makes a defensible home for a shrimp.

Labelled on Sea star and urchin

pelvic fin
also pelvic fins, ventral fin, ventral fins

The paired fin on the underside, answering to a hind limb. In gobies the two are fused into a disc that holds the fish against the bottom; in frogfish they prop it up.

Labelled on Bony fishFrogfish

pereiopods
also pereiopod, walking legs, walking leg

The five pairs of legs on the thorax of a decapod crustacean. The first pair, and sometimes the second, carry the claws; the rest walk.

Labelled on Decapod shrimp

pharyngeal teeth
also pharyngeal jaws, pharyngeal mill

A second set of grinding plates in the throat, behind the jaws. It is what lets wrasses, parrotfishes and emperors take hard-shelled prey with a mouth that looks incapable of it: the jaws seize, the pharyngeal teeth crush.

photo-identification
also photo identification, photo ID

Recognising an individual animal from a natural marking that does not change over its life, and matching it against a catalogue. The belly pattern of a manta, the flank spots of a whale shark and the fin notches of a dolphin are all used this way; most of what is known about where these animals go comes from divers' photographs rather than from tags.

pinniped
also pinnipeds

A seal, sea lion or walrus. Sea lions and fur seals have external ear flaps and can bring the hind flippers forward to walk; true seals cannot.

pinnule
also pinnules

One of the small side branches along a feather star's arm, giving it the feathered look. Food is caught on the pinnules and passed down a groove in the arm to the mouth.

planktivore
also planktivorous, planktivores

An animal that feeds on plankton drifting past rather than on anything attached to the reef. It explains a great deal of where fish are found: planktivores hang in the water column on the current-exposed side of a slope and drop into cover when threatened, which is why a wall in current holds fish that a sheltered bay does not.

plastron

The underside of a turtle's shell, joined to the carapace at the sides. Its pattern and the number of scutes on it are used in identification, and it is where a turtle's sex is judged from in adults.

pleon

The abdomen of a crustacean: the segmented muscular part behind the carapace, carrying the pleopods and ending in the tail fan. It is what a shrimp flicks to shoot backwards.

Labelled on Decapod shrimp

pleopods
also pleopod, swimmerets, swimmeret

The paired limbs under a crustacean's abdomen, used for slow swimming and, in the female, for holding the eggs until they hatch.

Labelled on Decapod shrimp

poisonous

Toxic when eaten. A puffer is poisonous, not venomous: it injects nothing, and it is only dangerous to something that tries to eat it.

polyclad
also polyclads, flatworm

A free-living marine flatworm. Thin enough to ripple, with a pair of folded pseudotentacles at the front margin and no gill plume and no rhinophores - which is how a flatworm is told from the nudibranch it is imitating.

polyp
also polyps

The individual animal of a coral, anemone or hydroid: a column fixed at its base, with a ring of tentacles around a mouth at the top. A hard coral is a colony of them sharing one skeleton; an anemone is a single large one.

Labelled on Cnidarian polyp

prehensile tail
also prehensile

A tail used for gripping. Seahorses, pygmy seahorses and pipehorses hold onto gorgonians, hydroids and weed with theirs, which is how they keep station in current that moves everything else.

Labelled on Seahorse

proboscis
also probosces

An extensible feeding tube that can be pushed out well beyond the body and drawn back in. A cone shell fires its harpoon from one, a nemertean worm hunts with one, and several sea slugs use one to reach into a prey animal.

prostomium

The lobe in front of the mouth of a polychaete worm, carrying the eyes, antennae and palps. On a bobbit worm it is the part that shows above the burrow.

protandrous hermaphrodite
also protandrous, protandry

An animal that matures as a male and can change to female later. Anemonefish and ribbon eels both do it, which is why the largest fish in an anemonefish group is the female and why a yellow ribbon eel was once a blue one.

protogynous hermaphrodite
also protogynous, protogyny

An animal that begins life as a female and can become male later. It is the rule in wrasses, parrotfishes, anthias and many groupers, and it is why the same species can appear on one reef as two: the terminal male is a changed female and looks nothing like her. The counterpart, male first, is a protandrous hermaphrodite.

radiole
also radioles

One of the feathered feeding filaments that make up the crown of a fan worm or a Christmas tree worm. They filter food from the water and carry the eyes that trigger the animal to withdraw.

radula
also radulae, radular, radular tooth

The toothed ribbon a mollusc feeds with, drawn over the food like a rasp. Its tooth shape and count are primary identification characters in sea slugs. Two groups on this site have modified it past recognition: the sacoglossans have a single row of piercing teeth for opening algal cells, and the melibes have lost it entirely.

Labelled on Dorid nudibranch

ram ventilation

Breathing by swimming forward with the mouth open so that water is forced over the gills. Sharks that use it cannot stop swimming for long; those with spiracles or an active gill pump can rest on the bottom.

raptorial appendage
also raptorial appendages, raptorial claw

The folded striking limb of a mantis shrimp, carried under the head. Spearers flick out a barbed dactyl to seize soft prey; smashers strike with a calcified heel hard enough to break shells, and the strike is fast enough to cavitate the water behind it.

Labelled on Mantis shrimp

rhinophores
also rhinophore

The pair of sensory tentacles on a nudibranch's head, used to detect scent in the water. Their shape — lamellate, annulate, smooth — is a primary identification character.

Labelled on Dorid nudibranchAeolid nudibranch

rostrum

The forward projection of a crustacean's carapace, between and beyond the eyes. Its length, shape and the number of teeth along it are standard identification characters.

Labelled on Decapod shrimp

sacoglossan
also sacoglossans, sap-sucking slug

A sea slug that feeds by piercing algal cells and sucking out the contents rather than by biting. Several keep the algae's chloroplasts alive inside themselves and draw nutrition from them. Not nudibranchs, though they are found alongside them and filed with them by everyone who dives.

salt gland

The gland that lets a sea turtle, a sea snake or a seabird drink seawater by excreting the excess salt. In turtles it empties beside the eye, which is why a nesting turtle appears to be weeping.

school
also schooling

A group of fish swimming in the same direction at the same speed and spacing, turning as one. It makes a single fish hard for a predator to pick out.

sclerite
also sclerites

A small hard element, usually of calcium carbonate, embedded in the soft tissue of a soft coral or gorgonian, giving the colony its stiffness and its texture. Their shape is used to identify species that look identical alive. A sponge's equivalent is a spicule.

scute
also scutes

A bony or horny plate in a reptile's shell or skin. The arrangement of the scutes is what separates a green turtle from a hawksbill: overlapping plates and a serrated rear edge in the hawksbill, flat abutting plates and a smooth edge in the green.

seagrass
also seagrass bed

A flowering plant, not an alga, growing rooted in sand in shallow water. Seagrass beds are nurseries for juvenile fish, and are what a dugong feeds on.

seamount

An underwater mountain rising from deep water without reaching the surface. Currents striking it push nutrients up, which is why seamounts hold large animals.

septum
also septa

One of the radiating vertical plates inside a coral corallite. The number and arrangement of septa is a standard character in coral identification and shows clearly in a close photograph of a bare skeleton.

sequester
also sequestered, sequestration

To take a chemical defence from food and store it rather than manufacture it. Sea slugs sequester sponge and bryozoan compounds, aeolids sequester stinging cells, and pufferfish sequester tetrodotoxin from their diet.

setae
also seta, setal

Bristles or hairs on a crustacean or a worm. In crabs they can be hooked, for holding decoration; in filter feeders they form the fans that strain plankton out of the water.

shoal
also shoaling

A loose group of fish staying together for company and safety, swimming at their own speeds and in their own directions. A school is the tighter, coordinated version of the same thing.

siphon

The muscular funnel through which a cephalopod expels water, used for jet propulsion, respiration and directing ink.

Labelled on Squid and octopus

siphonophore
also siphonophores

A colony of specialised individuals that functions as a single animal, each part doing one job: floating, swimming, catching prey or reproducing. The Portuguese man o' war is one, which is why it is not a jellyfish.

sirenian
also sea cow

A dugong or a manatee: a slow, plant-eating marine mammal with no dorsal fin. The dugong is the only sirenian in the Indo-Pacific and feeds entirely on seagrass.

snout
also snouts

The part of a fish's head in front of the eye. Its length against the head length is a standard measurement, and in seahorses, pipefish and seamoths it is drawn out into a tube that the animal feeds through.

Labelled on Bony fishSeahorse

soft ray
also soft rays

A segmented, flexible, usually branched fin support. Counting soft rays against spines in each fin is one of the standard ways a fish is identified in a photograph.

sp.
also spp.

Written after a genus name, it means the species has not been determined. Used in this reference where an animal is confidently placed in a genus but the species is unsettled or undescribed. The plural is spp.

spawning aggregation
also spawning aggregations

A gathering of a species at a particular place and time to spawn, often the same reef corner within a few days of the same moon each year. It is the most productive moment in the animal's year and the most dangerous: an aggregation is predictable, and several groupers and the bumphead parrotfish have been reduced across their range by being fished on one.

species complex

A group of very similar species that have not been fully separated, or that are separated on characters a photograph does not show. The entries say so where an identification is limited by this rather than by the photograph.

spicule
also spicules

A microscopic mineral rod embedded in the tissue of a sponge or soft coral, giving it structure. Some nudibranchs incorporate the spicules of their prey.

spiracle
also spiracles

An opening behind the eye of a ray, an angel shark or a wobbegong that draws water in for the gills. It lets a bottom-resting animal breathe without taking sand in through the mouth.

stomatopod
also stomatopods

A mantis shrimp. Not a shrimp and not closely related to one: a separate group with the second pair of limbs modified into either a club for smashing or a barbed spear for catching fish.

substrate

Whatever the animal is sitting on or in: sand, silt, rubble, rock, coral or another animal. Used in the entries when the exact material matters to where a species is found.

surge

The back-and-forth movement of water caused by waves passing overhead, strongest in the shallows. It moves a diver bodily and is the main reason a shallow macro subject is hard to photograph.

swim bladder

The gas-filled organ that lets a bony fish hold its depth without swimming. Fish that live on the bottom often have a reduced one or none at all, and sharks have none.

symbiosis
also symbiotic

Two species living in close association. It covers relationships that help both, help one without harming the other, or help one at the other's expense; the specific words are mutualism, commensalism and parasitism.

telson
also telsons

The last segment of a crustacean's abdomen, sitting at the centre of the tail fan between the uropods. In mantis shrimps it is armoured, and its keels and spines are counted in identification.

Labelled on Decapod shrimpMantis shrimp

tentacle
also tentacles

A flexible appendage with no joints and no skeleton, used to feel, catch or hold. In cnidarians the tentacles ring the mouth and carry the stinging cells. In cephalopods the word is narrower: an octopus has eight arms and no tentacles, while a squid or cuttlefish has eight arms and two longer tentacles that are shot out to take prey.

Labelled on Squid and octopusCnidarian polyp

terminal male
also terminal phase, terminal-phase

The final colouring of a male wrasse or parrotfish, usually reached by a female changing sex. It is typically bright, often bears no resemblance to the initial phase, and is worn by one dominant fish among many that look like something else entirely.

test

The rigid internal shell of a sea urchin or sand dollar, made of fused calcareous plates and carrying the spines and pedicellariae.

Labelled on Sea star and urchin

tetrodotoxin
also ttx

A potent neurotoxin that blocks nerve signalling, made by bacteria and concentrated by the animals that carry it - pufferfish and the blue-ringed octopus among them. There is no antidote; treatment is supportive.

thermocline

The boundary between two layers of water at different temperatures. It is visible as a shimmer, like heat haze, and the water below it is usually colder and often clearer.

tube feet
also tube foot, podia

The rows of small hydraulic feet along the underside of each arm of a sea star, or between the spines of an urchin. Each is pushed out by water pressure and most end in a sucker; together they move the animal and hold its prey open.

Labelled on Sea star and urchin

tubercle
also tubercles

A rounded raised bump on the skin or shell. In nudibranchs the arrangement of tubercles is often diagnostic.

Labelled on Dorid nudibranch

type locality

The place the specimen used to describe a species originally came from. It is a historical fact about the name, not a statement about where the animal lives now.

upwelling

Deep water rising to the surface, bringing nutrients with it. It makes cold, often green water and a great deal of life, and it is why some of the richest diving is not the clearest.

uropods
also uropod

The paired flattened appendages either side of the telson. With it they make the tail fan of a shrimp, lobster or mantis shrimp.

Labelled on Decapod shrimpMantis shrimp

veliger

The swimming larval stage of most molluscs, carrying a ciliated lobe it both swims and feeds with. Blackwater dives are one of the few places a diver sees them.

venomous

Injecting a toxin through a spine, a fang or a harpoon. A stonefish, a lionfish and a cone shell are venomous. It is not the same as poisonous, and the distinction decides what first aid applies.

vertical migration
also diel vertical migration

The nightly movement of open-ocean animals from deep water towards the surface, and back down before dawn. It is the largest daily movement of animals on the planet, and it is what a blackwater dive is: the deep-water fauna comes up to a depth a diver can reach, for a few hours, and then leaves.

vibrissae
also whiskers

The stiff facial whiskers of a seal or sea lion, sensitive enough to follow the wake a fish left in the water some seconds earlier.

viviparous
also live-bearing

Bearing live young that were nourished directly by the mother during development, rather than by a yolk. Among sharks it includes the requiem sharks and the hammerheads.

water vascular system

The network of fluid-filled canals that works an echinoderm's tube feet. It is filled from the sea through the madreporite, and it is the reason a sea star moves slowly and grips hard.

whorl
also whorls

One complete turn of a snail's shell. Counting whorls and reading how tightly they are coiled is basic to shell identification.

zoea
also zoeae

An early swimming larval stage of a crab or other decapod, usually spiny and nothing like the adult. Common on blackwater dives.

zooid
also zooids

One individual within a colonial animal: a siphonophore, a bryozoan, a colonial ascidian or a coral. In many colonies the zooids are not identical, and each kind does one job for the whole.

zooxanthellae
also zooxanthella

Single-celled algae living inside the tissue of corals, giant clams, some anemones and a few sea slugs, passing sugars to the host in exchange for shelter and nutrients. Bleaching is the host expelling them.

Labelled on Cnidarian polyp